tripsAndDipR (version 0.1.0)

Identification of 2n and 3n Samples from Amplicon Sequencing Data

Description

Uses read counts for biallelic single nucleotide polymorphisms (SNPs) to compare the likelihoods for the observed read counts given that a sample is either diploid or triploid. It allows parameters to be specified to account for sequencing error rates and allelic bias. For details of the algorithm, please see Delomas (2019) .

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install.packages('tripsAndDipR')

Monthly Downloads

137

Version

0.1.0

License

MIT + file LICENSE

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Repository

https://github.com/delomast/tripsAndDipR

Maintainer

Thomas Delomas

Last Published

August 28th, 2019

Functions in tripsAndDipR (0.1.0)

tripsAndDip

Uses read counts for biallelic SNPs to determine if a sample is diploid or triploid