epitimes

The inputed data frame with the cases vector. This is the same data you put into runtsir.

data

The required number of cases observed to declare it an outbreak.

threshold

The required duration (in 52/IP weeks) to declare it an outbreak.

epi.length

The times at which we declare a new outbreak has started based on the threshold parameter.

An implementation of the time-series Susceptible-Infected-Recovered (TSIR) model using a number of different fitting options for infectious disease time series data. The manuscript based on this package can be found here <doi:10.1371/journal.pone.0185528>. The method implemented here is described by Finkenstadt and Grenfell (2000) <doi:10.1111/1467-9876.00187>.

epitimes: epitimes

Description

Usage

Arguments