ttScreening (version 1.6)

Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples

Description

A screening process utilizing training and testing samples to filter out uninformative DNA methylation sites. Surrogate variables (SVs) of DNA methylation are included in the filtering process to explain unknown factor effects.

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Version

Install

install.packages('ttScreening')

Monthly Downloads

199

Version

1.6

License

Artistic-2.0

Maintainer

Meredith Ray

Last Published

October 11th, 2018

Functions in ttScreening (1.6)

num.sv2

Adjusted num.sv which estimates the number of important surrogate variables from a gene expression data set.

irwsva.build2

Adjusted irwsva.build which builds surrogate variables from gene expression data

sva2

The adjusted sva code using irwsva.build2

ttScreening-package

Genome-Wide DNA Methylation Sites Screening by Use of Training and Testing Samples

ttScreening

A screening process built upon training and testing samples