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ttScreening (version 1.0)

Genome-wide DNA methylation sites screening by use of training and testing samples.

Description

This package utilizes training and testing samples to filter out uninformative DNA methylation sites. Surrogate variables (SVs) of DNA methylation are included in the filtering process to explain unknown factor effects.

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Version

Install

install.packages('ttScreening')

Monthly Downloads

190

Version

1.0

License

Artistic-2.0

Maintainer

Xin Tong

Last Published

October 5th, 2013

Functions in ttScreening (1.0)

ttScreening

A screening process built upon training and testing samples

sva2

The adjusted sva code using irwsva.build2

irwsva.build2

Adjusted irwsva.build which builds surrogate variables from gene expression data