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tteICE (version 1.1.3)

Treatment Effect Estimation for Time-to-Event Data with Intercurrent Events

Description

Analysis of treatment effects in clinical trials with time-to-event outcomes is complicated by intercurrent events. This package implements methods for estimating and inferring the cumulative incidence functions for time-to-event (TTE) outcomes with intercurrent events (ICE) under the five strategies outlined in the ICH E9 (R1) addendum, see Deng (2025) . This package can be used for analyzing data from both randomized controlled trials and observational studies. In general, the data involve a primary outcome event and, potentially, an intercurrent event. Two data structures are allowed: competing risks, where only the time to the first event is recorded, and semicompeting risks, where the times to both the primary outcome event and intercurrent event (or censoring) are recorded. For estimation methods, users can choose nonparametric estimation (which does not use covariates) and semiparametrically efficient estimation.

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Install

install.packages('tteICE')

Monthly Downloads

301

Version

1.1.3

License

GPL-3

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Maintainer

Yi Zhou

Last Published

March 2nd, 2026

Functions in tteICE (1.1.3)

scr.composite.eff

Fit CIFs using composite variable strategy for semicompeting risks data, based on efficient influence functions
scr.natural.eff

Fit CIFs using hypothetical strategy (I) for semicompeting risks data, based on efficient influence functions
surv.HR

Estimate hazard ratios
scr.tteICE

Fit CIFs for semicompeting risks time-to-event data with intercurrent events.
surv.composite.eff

Fit CIFs using composite variable strategy for competing risks data, based on efficient influence functions
surv.composite

Fit CIFs using composite variable strategy for competing risks data
scr.removed.eff

Fit CIFs using hypothetical strategy (II) for semicompeting risks data, based on efficient influence functions
scr.whileon

Fit CIFs using while on treatment strategy for semicompeting risks data
scr.treatment.eff

Fit CIFs using treatment policy strategy for semicompeting risks data, based on efficient influence functions
surv.principal.eff

Fit CIFs using principal stratum strategy for competing risks data, based on efficient influence functions
surv.principal

Fit CIFs using principal stratum strategy for competing risks data
surv.boot

Calculate standard errors for estimated CIFs and treatment effects
scr.principal

Fit CIFs using principal stratum strategy for semicompeting risks data
scr.principal.eff

Fit CIFs using principal stratum strategy for semicompeting risks data, based on efficient influence functions
surv.tteICE

Fit CIFs for competing risks time-to-event data with intercurrent events.
surv.whileon

Fit CIFs using while on treatment strategy for competing risks data
surv.treatment

Fit CIFs using treatment policy strategy for competing risks data
surv.treatment.eff

Fit CIFs using treatment policy strategy for competing risks data, based on efficient influence functions
surv.natural.eff

Fit CIFs using hypothetical strategy (I) for competing risks data, based on efficient influence functions
zph

S3 method to checking proportional hazards
surv.natural

Fit CIFs using hypothetical strategy (I) for competing risks data
zph.tteICE

Checking proportional hazards of 'tteICE' objects
surv.removed

Fit CIFs using hypothetical strategy (II) for competing risks data
summary.tteICE

Summary method for 'tteICE' objects
surv.removed.eff

Fit CIFs using hypothetical strategy (II) for competing risks data, based on efficient influence functions
scr.whileon.eff

Fit CIFs using while on treatment strategy for semicompeting risks data, based on efficient influence functions
tteICE-package

tteICE: Treatment Effect Estimation for Time-to-Event Data with Intercurrent Events
surv.whileon.eff

Fit CIFs using while on treatment strategy for competing risks data, based on efficient influence functions
tteICE

Using formula to fit CIFs for time-to-event data with intercurrent events
tteICEShiny

Shiny app for tteICE
predict.tteICE

Predict method for 'tteICE' objects at specific time points
plot_ate

Plot estimated treatment effects
print.summary.tteICE

Print the summary of 'tteICE'
coef.tteICE

Coefficients of 'tteICE' objects
plot.tteICE

Plot method for 'tteICE' objects
bshaz.tteICE

Baseline hazards of 'tteICE' objects
print.tteICE

Print method for 'tteICE' objects
bmt

Data from Section 1.3 of Klein and Moeschberger (1997)
bshaz

S3 method of baseline hazards
plot_inc

Plot estimated cumulative incidence functions (CIFs)
scr.removed

Fit CIFs using hypothetical strategy (II) for semicompeting risks data
scr.treatment

Fit CIFs using treatment policy strategy for semicompeting risks data
scr.composite

Fit CIFs using composite variable strategy for semicompeting risks data
scr.natural

Fit CIFs using hypothetical strategy (I) for semicompeting risks data