uHMM (version 1.0)

HMMparams: Hidden Markov Model parameter estimation

Description

This function is used by the uHMMinterface to estimate parameters of a Hidden Markov Model.

Usage

HMMparams(stateSeq, symbolSeq)

Arguments

stateSeq

a numeric vector of state sequencing.

symbolSeq

a numeric vector of symbol sequencing.

Value

HMMparams returns a list containing :

trans

The transition matrix.

emis

The emission matrix.

startProb

The vector of initial probability distribution (initial states are supposed equiprobable).

See Also

transitionMatrix emissionMatrix