Make Pretty ggplot x-Axis Log 10 Scale
Performs parameter estimation
Make Pretty ggplot x- or y-Axis Log 10 Scale
Generate Text Report with Estimation Results
Verify System Steady State
Generates a Parameter Based on <IIV:?>
in the System File
Implementation of the linspace
Function from Matlab
Pad String with Spaces
Select Records from NONMEM-ish Data Set
Make Pretty ggplot y-Axis Log 10 Scale
Simulate With Titration or Rule-Based Inputs
Define Estimation Cohort
Parse String for Prototype Functions
Implementation of the logspace
Function from Matlab
Simulate Individual Response
Clear all Cohorts
Make ggplot Figure Pretty
Fetch Mathematical Set
system_check_steady_state
Verify System Steady State
Calculate Solution Statistics
system_check_requirements
Check For Perl and C Tools
Fetch Current Parameter Guesses
Define Sample Times Around Events
Converts the Wide/Verbose Output Simulation Functions into Data Frames
Makes Forcing Function From Times and Values
Loading Datasets
system_nca_parameters_meta
List NCA parameters, text names and descriptions
Fetch System Timescale
Run Population Simulations
Create New Analysis Template
Compares Estimate to Bounds
Plot Estimation Results
Initialize System Log File
Generate a Report from Parameter Estimation
Report NCA
Define Cohorts from NONMEM Input File
Fetch Variability Terms
Check NONMEM Dataset for Automatic Definitions
Selecting Parameter Sets
Automatic NCA
Columns in NCA Analysis
Fetch System Parameters
Initialize a New Report
system_estimate_parameters
Control Estimation Process
system_fetch_rpt_officer_object
Extracts the officer Object From the Specified ubiquity Report
Add Log Entry
Fetch NCA Results
Save variables to files
system_rpt_template_details
Generate Details about Report Template
View Information About the System
Save Report to a File
Zero All Model Inputs
Create New system.txt
File
Add Slide to a Powerpoint Report
Require Suggested Packages
General Observation Details Function
Set Value for Parameter
Summarize NCA Results in Tabular Format
Setting Analysis Options
Initialize GLP study design
Set Bolus Inputs
system_rpt_add_doc_content
Adds Content to a Word Report
system_fetch_rpt_onbrand_object
Extracts the onbrand Object From the Specified ubiquity Report
Fetch List of Available System Templates
Actual Function Called by SI_TT_BOLUS
system_set_rpt_onbrand_object
Sets the onbrand Object for the Specified ubiquity Report
Design GLP Study For a Scenario
Implementation of Matlab toc()
command
Check Names of Cohorts, Analyses, Reports, etc.
Set Infusion Rate Inputs
Titration Rules
Converts Numeric Variables into Padded Strings
Calculate Timecourse Statistics for a Matrix of Responses
system_simulate_estimation_results
Simulate Results at Estimates
Implementation of Matlab tic()
command
system_set_rpt_officer_object
Sets the officer Object for the Specified ubiquity Report
Actual Function Called by SI_TT_RATE
Alter Initial Guess and Parameter Bounds
Convert R Objects to Strings
Set Covariate Values
Fetch Ubiquity Workshop Sections
Set Variability Terms
Define Titration Triggers and Actions
Print and Log Messages
Convert Time in Timescale to Simulation Time
pso
Wrapper for calculate_objective
Build the System File
Calculate the halflife of data
Calculates the Variance in od_general
Calculates the Value of the Specified Objective Function
Extracts Covariates for a Subject from a Subject Data File
Archive Estimation Results
Calculate AUC for Sparse Data
GA
Wrapper for calculate_objective
Wrapper for system_log_entry Used in ShinyApp
Create Full Parameter Vector from Estimation Subset
Generate Subject
Parse Prototype Functions for Arguments