uplot_ppm_avg

This function generates a bar plot showing the median of mass accuracy (ppm) for each sample.
It also provides the option to convert the plot into an interactive <code>plotly</code> object.

Provides tools for assigning molecular formulas from exact masses
obtained by ultrahigh-resolution mass spectrometry. The methodology follows
the workflow described in Leefmann et al. (2019) <doi:10.1002/rcm.8315>.
The package supports the inspection, filtering and visualization of
molecular formula data and includes utilities for calculating common
molecular parameters (e.g., double bond equivalents, DBE). A graphical
user interface is available via the 'shiny'-based 'ume' application.

Boris Koch

Ultrahigh-Resolution Mass Spectrometry Data Evaluation for
Complex Organic Matter

uplot_ppm_avg function

<dl><dt>df</dt>
<dd>A data frame containing the data. The columns <code>ppm</code> (ppm values) and <code>file_id</code>
(sample identifiers) should be present in the data.</dd>
<dt>cex.axis</dt>
<dd>Numeric. Size of axis text (default is <code>1</code>).</dd>
<dt>cex.lab</dt>
<dd>Numeric. Size of axis labels (default is <code>1.4</code>).</dd>
<dt>plotly</dt>
<dd>Logical. If TRUE, return interactive plotly object.</dd>
<dt>...</dt>
<dd>Additional arguments passed to methods.</dd></dl>

Arguments

Plot Median of Mass Accuracy per Sample (ppm) — uplot_ppm_avg

<dl>

<dt>df</dt>
<dd>A data frame containing the data. The columns <code>ppm</code> (ppm values) and <code>file_id</code>
(sample identifiers) should be present in the data.</dd>


<dt>cex.axis</dt>
<dd>Numeric. Size of axis text (default is <code>1</code>).</dd>


<dt>cex.lab</dt>
<dd>Numeric. Size of axis labels (default is <code>1.4</code>).</dd>


<dt>plotly</dt>
<dd>Logical. If TRUE, return interactive plotly object.</dd>


<dt>...</dt>
<dd>Additional arguments passed to methods.</dd>

</dl>

uplot_ppm_avg: Plot Median of Mass Accuracy per Sample (ppm)

Description

Usage

Value

Arguments