umiAnalyzer (version 1.0.0)

generateVCF: Generate VCF file from UMI sample or UMI experiment object

Description

Generate VCF file from UMI sample or UMI experiment object

Usage

generateVCF(object, outDir = getwd(), outFile, printAll = FALSE)

Arguments

object

Requires a UMI sample or UMI experiment object

outDir

String. Output directory, defaults to working directory.

outFile

String. Name of the output file

printAll

Logical. Should all or only trusted variant be printed?

Value

A VCF file

Examples

# NOT RUN {
library(umiAnalyzer)

main <- system.file("extdata", package = "umiAnalyzer")

simsen <- createUmiExperiment(main)

simsen <- filterUmiObject(simsen)

generateVCF(simsen,'simsen.vcf', printAll = FALSE, save = FALSE)
# }
# NOT RUN {
# }