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unfoldr (version 0.5.1)

Stereological Unfolding for Spheroidal Particles

Description

Stereological unfolding as implemented in this package consists in the estimation of the joint size-shape-orientation distribution of spheroidal shaped particles based on the same measured quantities of corresponding planar section profiles. A single trivariate discretized version of the (stereological) integral equation in the case of prolate and oblate spheroids is solved numerically by the EM algorithm. The estimation of diameter distribution of spheres from planar sections (Wicksell's corpuscle problem) is also implemented. Further, the package provides routines for the simulation of a Poisson germ- grain process with either spheroids or spheres as grains together with functions for planar sections. For the purpose of exact simulation a bivariate size-shape distribution is implemented.

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Version

Install

install.packages('unfoldr')

Monthly Downloads

17

Version

0.5.1

License

GPL-2

Maintainer

Markus Baaske

Last Published

May 4th, 2016

Functions in unfoldr (0.5.1)

planarSection

Sphere planar section
getMaxRadius

Maximum radius of exact simulated spheroids
verticalSection

Spheroid vertical section
setupSphereSystem

Setup sphere system
parameterEstimates

Estimated spatial histogram data
getSphereSystem

Get sphere system
em.spheroids

Trivariate stereological unfolding
getSpheroidSystem

Get spheroid system
sectionProfiles

Constuctor section profiles
unfold

Stereological unfolding
simModel3d

Simulate spheroid system
em.saltykov

Expectation Maximization algorithm
coefficientMatrixSpheres

Calculate coefficients (spheres)
setupSpheroidSystem

Setup spheroid system
setbreaks

Break vectors
updateIntersections

Updated spheroid intersections
simSphereSystem

Simulation of sphere system
binning3d

Histogram data
coefficientMatrixSpheroids

Calculate coefficients (spheroids)
binning1d

Binning numeric values
parameters3d

Original parameters
trivarHist

Trivariate histogram
simSpheroidSystem

Simulation of spheroid system