str: Compactly Display the Structure of an Arbitrary R Object

Description

Compactly display the internal structure of an R object, a diagnostic function and an alternative to summary (and to some extent, dput). Ideally, only one line for each ‘basic’ structure is displayed. It is especially well suited to compactly display the (abbreviated) contents of (possibly nested) lists. The idea is to give reasonable output for any R object. It calls args for (non-primitive) function objects.

strOptions() is a convenience function for setting options(str = .), see the examples.

Usage

str(object, …)
# S3 method for data.frame
str(object, …)
# S3 method for default
str(object, max.level = NA,
    vec.len  = strO$vec.len, digits.d = strO$digits.d,
    nchar.max = 128, give.attr = TRUE,
    drop.deparse.attr = strO$drop.deparse.attr,
    give.head = TRUE, give.length = give.head,
    width = getOption("width"), nest.lev = 0,
    indent.str = paste(rep.int(" ", max(0, nest.lev + 1)),
                       collapse = ".."),
    comp.str = "$ ", no.list = FALSE, envir = baseenv(),
    strict.width = strO$strict.width,
    formatNum = strO$formatNum, list.len = 99, …)
strOptions(strict.width = "no", digits.d = 3, vec.len = 4,
           drop.deparse.attr = TRUE,
           formatNum = function(x, ...)
                       format(x, trim = TRUE, drop0trailing = TRUE, ...))

Arguments

object

any R object about which you want to have some information.

max.level

maximal level of nesting which is applied for displaying nested structures, e.g., a list containing sub lists. Default NA: Display all nesting levels.

vec.len

numeric (>= 0) indicating how many ‘first few’ elements are displayed of each vector. The number is multiplied by different factors (from .5 to 3) depending on the kind of vector. Defaults to the vec.len component of option "str" (see options) which defaults to 4.

digits.d

number of digits for numerical components (as for print). Defaults to the digits.d component of option "str" which defaults to 3.

nchar.max

maximal number of characters to show for character strings. Longer strings are truncated, see longch example below.

give.attr

logical; if TRUE (default), show attributes as sub structures.

drop.deparse.attr

logical; if TRUE (default), deparse(control = <S>) will not have "showAttributes" in <S>. Used to be hard coded to FALSE and hence can be set via strOptions() for back compatibility.

give.length

logical; if TRUE (default), indicate length (as [1:…]).

give.head

logical; if TRUE (default), give (possibly abbreviated) mode/class and length (as <type>[1:…]).

width

the page width to be used. The default is the currently active options("width"); note that this has only a weak effect, unless strict.width is not "no".

nest.lev

current nesting level in the recursive calls to str.

indent.str

the indentation string to use.

comp.str

string to be used for separating list components.

no.list

logical; if true, no ‘list of …’ nor the class are printed.

envir

the environment to be used for promise (see delayedAssign) objects only.

strict.width

string indicating if the width argument's specification should be followed strictly, one of the values c("no", "cut", "wrap"), which can be abbreviated. Defaults to the strict.width component of option "str" (see options) which defaults to "no" for back compatibility reasons; "wrap" uses strwrap(*, width = width) whereas "cut" cuts directly to width. Note that a small vec.length may be better than setting strict.width = "wrap".

formatNum

a function such as format for formatting numeric vectors. It defaults to the formatNum component of option "str", see “Usage” of strOptions() above, which is almost back compatible to R <= 2.7.x, however, using formatC may be slightly better.

list.len

numeric; maximum number of list elements to display within a level.

…

potential further arguments (required for Method/Generic reasons).

Value

str does not return anything, for efficiency reasons. The obvious side effect is output to the terminal.

Examples

Run this code

# NOT RUN {
require(stats); require(grDevices); require(graphics)
## The following examples show some of 'str' capabilities
str(1:12)
str(ls)
str(args) #- more useful than  args(args) !
str(freeny)
str(str)
str(.Machine, digits.d = 20) # extra digits for identification of binary numbers
str( lsfit(1:9, 1:9))
str( lsfit(1:9, 1:9), max.level = 1)
str( lsfit(1:9, 1:9), width = 60, strict.width = "cut")
str( lsfit(1:9, 1:9), width = 60, strict.width = "wrap")
op <- options(); str(op)   # save first;
                           # otherwise internal options() is used.
need.dev <-
  !exists(".Device") || is.null(.Device) || .Device == "null device"
{ if(need.dev) postscript()
  str(par())
  if(need.dev) graphics.off()
}
ch <- letters[1:12]; is.na(ch) <- 3:5
str(ch) # character NA's

str(list(a = "A", L = as.list(1:100)), list.len = 9)
##                                     ------------
## " .. [list output truncated] "

## Long strings,   'nchar.max'; 'strict.width' :
nchar(longch <- paste(rep(letters,100), collapse = ""))
str(longch)
str(longch, nchar.max = 52)
str(longch, strict.width = "wrap")

## Multibyte characters in strings (in multibyte locales):
oloc <- Sys.getlocale("LC_CTYPE")
mbyte.lc <- if(.Platform$OS.type == "windows")
 "English_United States.28605" else "en_GB.UTF-8"
try(Sys.setlocale("LC_CTYPE", mbyte.lc))
## Truncation behavior (<-> correct width measurement) for "long" non-ASCII:
idx <- c(65313:65338, 65345:65350)
fwch <- intToUtf8(idx) # full width character string: each has width 2
ch <- strtrim(paste(LETTERS, collapse="._"), 64)
(ncc <- c(c.ch = nchar(ch),   w.ch = nchar(ch,   "w"),
          c.fw = nchar(fwch), w.fw = nchar(fwch, "w")))
stopifnot(unname(ncc) == c(64,64, 32, 64))
## nchar.max: 1st line needs an increase of  2  in order to see  1  (in UTF-8!):
invisible(lapply(60:66, function(N) str(fwch, nchar.max = N)))
invisible(lapply(60:66, function(N) str( ch , nchar.max = N))) # "1 is 1" here
## revert locale to previous:
Sys.setlocale("LC_CTYPE", oloc)


## Settings for narrow transcript :
op <- options(width = 60,
              str = strOptions(strict.width = "wrap"))
str(lsfit(1:9,1:9))
str(options())
## reset to previous:
options(op)


# }
# NOT RUN {
str(quote( { A+B; list(C, D) } ))

# }
# NOT RUN {
<!-- % package attaching/detaching only when needed: -->
# }
# NOT RUN {
## S4 classes :
require(stats4)
x <- 0:10; y <- c(26, 17, 13, 12, 20, 5, 9, 8, 5, 4, 8)
ll <- function(ymax = 15, xh = 6)
      -sum(dpois(y, lambda=ymax/(1+x/xh), log=TRUE))
fit <- mle(ll)
str(fit)
# }

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Description

Usage

Arguments

Value

See Also

Examples