Create a Tar Archive
Create a tar archive.
tar(tarfile, files = NULL, compression = c("none", "gzip", "bzip2", "xz"), compression_level = 6, tar = Sys.getenv("tar"), extra_flags = "")
A character vector of filepaths to be archived: the default is to archive all files under the current directory.
character string giving the type of compression to be used (default none). Can be abbreviated.
integer: the level of compression. Only used for the internal method.
character string: the path to the command to be used. If the command itself contains spaces it needs to be quoted (e.g., by
shQuote) -- but argument
tarmay also contain flags separated from the command by spaces.
Any extra flags for an external
This is either a wrapper for a
tar command or uses an
internal implementation in R. The latter is used if
is a connection or if the argument
"" (the ‘factory-fresh’ default). Note that whereas
Unix-alike versions of R set the environment variable
value is not the default for this function.
extra_flags is passed to an external
so is platform-dependent. Possibly useful values include -h
(follow symbolic links, also -L on some platforms),
--acls, --exclude-backups, --exclude-vcs (and
similar) and on Windows --force-local (so drives can be
included in filepaths: however, this is the default for the
tar). For GNU
--format=ustar forces a more portable format. (The default is
set at compilation and will be shown at the end of the output from
tar --help: for version 1.30 ‘out-of-the-box’ it is
--format=gnu, but the manual says the intention is to change
to --format=posix which is the same as
it was never part of the POSIX standard for
tar and should
not be used.)
bsdtar, --format=ustar is more
portable than the default.
One issue which can cause an external command to fail is a command
line too long for the system shell: as from R 3.5.0 this is worked
around if the external command is detected to be GNU
files = '.' will usually not work with an external
tar as that would expand the list of files after
tarfile is created. (It does work with the default internal
The return code from
0 for the internal
For users of macOS (formerly OS X). Apple's HFS and HFS+ file systems
have a legacy concept of ‘resource forks’ dating from classic
Mac OS and rarely used nowadays. Apple's version of
stores these as separate files in the tarball with names prefixed by
._, and unpacks such files into resource forks (if possible):
other ways of unpacking (including
untar in R) unpack
them as separate files.
tar is set to the command
tar on macOS,
COPYFILE_DISABLE=1 is set, which for the
system version of
tar prevents these separate files being
included in the tarball.
The ‘tar’ format no longer has an agreed standard!
‘Unix Standard Tar’ was part of POSIX 1003.1:1998 but has been
removed in favour of
pax, and in any case many common
implementations diverged from the former standard.
Many R platforms use a version of GNU
Rtools on Windows), but the behaviour seems to be changed
with each version. macOS >= 10.6 and FreeBSD use
from the libarchive project (but for macOS, a version from 2010), and
commercial Unixes will have their own versions.
available for many other platforms: macOS up to at least 10.9 had GNU
gnutar and other platforms,
e.g.Solaris, have it as
gtar: on a Unix-alike
configure will try
Known problems arise from
The handling of file paths of more than 100 bytes. These were unsupported in early versions of
tar, and supported in one way by POSIX
tarand in another by GNU
tarand yet another by the POSIX
paxcommand which recent
tarprograms often support. The internal implementation warns on paths of more than 100 bytes, uses the ‘ustar’ way from the 1998 POSIX standard which supports up to 256 bytes (depending on the path: in particular the final component is limited to 100 bytes) if possible, otherwise the GNU way (which is widely supported, including by
Most formats do not record the encoding of file paths.
tarwas developed on an OS that used hard links, and physical files that were referred to more than once in the list of files to be included were included only once, the remaining instances being added as links. Later a means to include symbolic links was added. The internal implementation supports symbolic links (on OSes that support them), only. Of course, the question arises as to how links should be unpacked on OSes that do not support them: for regular files file copies can be used.
Names of links in the ‘ustar’ format are restricted to 100 bytes. There is an GNU extension for arbitrarily long link names, but
bsdtarignores it. The internal method uses the GNU extension, with a warning.
Header fields, in particular the padding to be used when fields are not full or not used. POSIX did define the correct behaviour but commonly used implementations did (and still do) not comply.
File sizes. The ‘ustar’ format is restricted to 8GB per (uncompressed) file.
For portability, avoid file paths of more than 100 bytes and all links (especially hard links and symbolic links to directories).
The internal implementation writes only the blocks of 512 bytes
required (including trailing blocks of nuls), unlike GNU
which by default pads with nul to a multiple of 20 blocks
(10KB). Implementations which pad differ on whether the block padding
should occur before or after compression (or both): padding was
designed for improved performance on physical tape drives.
The ‘ustar’ format records file modification times to a resolution of 1 second: on file systems with higher resolution it is conventional to discard fractional seconds.
When an external
tar command is used, compressing the tar
archive requires that
tar supports the -z,
-j or -J flag, and may require the appropriate
xz) to be
available. For GNU
tar, further compression programs can be
specified by e.g.
extra_flags = "-I lz4".
Some versions of
bsdtar accept options such as
--lz4, --lzop and --lrzip or an external
--use-compress-program lz4: these could
be supplied in
NetBSD prior to 8.0 used flag --xz rather than -J,
so this should be used via
extra_flags = "--xz" rather
compression = "xz". The commands from OpenBSD and the
Heirloom Toolchest are not documented to support
tar programs in commercial Unixen such as AIX and
Solaris do not support compression.
for the way the POSIX utility