utr.annotation (version 1.0.4)

getTranscriptIdsForOneUTRVariant: Find all the ensembl_transcript_id for a variant which fall in the specified region for one variant

Description

getTranscriptIdsForOneUTRVariant find transcripts if a variant fall in their specified region

Usage

getTranscriptIdsForOneUTRVariant(variant, transcriptRegions, start, end)

Arguments

variant

one row of variants table

transcriptRegions

transcripts structure table from ensembl

start

column name of the start region in the transcriptRegions table

end

column name of the end region in the transcriptRegions table

Value

A string representing a list of containing ensembl_transcript_id and collapsed with ;