utr.annotation (version 1.0.4)

predictMRLInAltOneVariant: Predict altered MRL for one variant

Description

Predict altered MRL for one variant

Usage

predictMRLInAltOneVariant(
  variant,
  seqTable,
  transcriptsTable,
  transcriptIdColumn,
  model
)

Arguments

variant

A variant

seqTable

corresponding 5' UTR sequence table from Ensembl DB. Have two columns: ensembl_transcript_id and seq

transcriptsTable

transcripts structure table from ensembl with start and end columns for start and end coordinates of the 5' UTR

transcriptIdColumn

the name of the transcript id column

model

MRL prediction model

Value

MRL prediction of altered 5' UTR for the input variant