utr.annotation (version 1.0.4)

predictMRLOneVariant: Predict MRL for one variant

Description

Predict MRL for one variant

Usage

predictMRLOneVariant(variant, seqTable, transcriptIdColumn, model)

Arguments

variant

A variant

seqTable

corresponding 5' UTR sequence table from Ensembl DB. Have two columns: ensembl_transcript_id and seq

transcriptIdColumn

the name of the transcript id column

model

MRL prediction model

Value

MRL prediction of reference 5' UTR for the input variant