utr.annotation (version 1.0.4)

queryEnsemblInfo: query transcrips regions, utr sequences, and coding sequences from Ensembl database

Description

queryEnsemblInfo query transcrips regions, utr sequences, and coding sequences from Ensembl database and save rds into sepecified directory

Usage

queryEnsemblInfo(
  transcriptIds,
  species,
  ensemblVersion,
  dataDir,
  verbose = FALSE
)

Arguments

transcriptIds

Ensembl transcript ids

species

human or mouse

ensemblVersion

Ensembl database version

dataDir

path to store database information

verbose

Whether print diagnostic messages. The default is FALSE.

Value

save all Db objects into dataDir