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utr.annotation (version 1.0.4)

readVariantData: Read variant file in CSV format

Description

readVariantData Read variant file in CSV / VCF format, check if it contains required columns for UTR annotation, split rows if there're collapsed columns (items are separated by ,), and remove rows containing NAs in Chr, Pos, Ref or Alt

Usage

readVariantData(variantFile, format = "csv")

Arguments

variantFile

A varian file in CSV or VCF format

format

File format, csv or vcf. The default file format is csv

Value

A data.table containing all variants if variant file is valid