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utr.annotation (version 1.0.4)

validateTranscripts: Checking whether a transcript is valid

Description

validateTranscripts checks 1) whether a transcript has a peptide sequence, 2) whether the peptide sequence ends with "*", 3) whether the peptide starts with "M"

Usage

validateTranscripts(transcriptIds, species, ensemblVersion, dataDir = "data")

Arguments

transcriptIds

a list of Ensembl transcript ids

species

human or mouse

ensemblVersion

Ensembl database version

Value

transcript_regions with additional flags: protein_coding, valid_startcodon, valid_stopcodon