vDiveR (version 2.0.1)

plot_correlation: Entropy and total variant incidence correlation plot

Description

This function plots the correlation between entropy and total variant incidence of all the provided protein(s).

Usage

plot_correlation(
  df,
  host = 1,
  alpha = 1/3,
  line_dot_size = 3,
  base_size = 11,
  ylabel = "k-mer entropy (bits)\n",
  xlabel = "\nTotal variants (%)",
  ymax = ceiling(max(df$entropy)),
  ybreak = 0.5
)

Value

A scatter plot

Arguments

df

DiMA JSON converted csv file data

host

number of host (1/2)

alpha

any number from 0 (transparent) to 1 (opaque)

line_dot_size

dot size in scatter plot

base_size

base font size in plot

ylabel

y-axis label

xlabel

x-axis label

ymax

maximum y-axis

ybreak

y-axis breaks

Examples

plot_correlation(proteins_1host)
plot_correlation(protein_2hosts, base_size = 2, ybreak=1, ymax=10, host = 2)