plot_dynamics_protein

This function compactly display the dynamics of diversity motifs (index and its variants: major, minor and unique)
in the form of dot plot(s) as well as violin plots for all the provided individual protein(s).

To ease the visualization of outputs from Diversity Motif Analyser ('DiMA';
<https://github.com/BVU-BILSAB/DiMA>). 'vDiveR' allows visualization of the diversity
motifs (index and its variants – major, minor and unique) for elucidation of
the underlying inherent dynamics. Please refer <https://vdiver-manual.readthedocs.io/en/latest/>
for more information.

Pendy Tok

vDiveR

Visualization of Viral Protein Sequence Diversity Dynamics

Li Chuin Chong

Evgenia Chikina

Yin Cheng Chen

Mohammad Asif Khan

plot_dynamics_protein function

<dl><dt>df</dt>
<dd>DiMA JSON converted csv file data</dd>
<dt>host</dt>
<dd>number of host (1/2)</dd>
<dt>protein_order</dt>
<dd>order of proteins displayed in plot</dd>
<dt>base_size</dt>
<dd>base font size in plot</dd>
<dt>alpha</dt>
<dd>any number from 0 (transparent) to 1 (opaque)</dd>
<dt>line_dot_size</dt>
<dd>dot size in scatter plot</dd>
<dt>bw</dt>
<dd>smoothing bandwidth of violin plot (default: nrd0)</dd>
<dt>adjust</dt>
<dd>adjust the width of violin plot (default: 1)</dd></dl>

Arguments

Dynamics of Diversity Motifs (Protein) Plot — plot_dynamics_protein

<dl>

<dt>df</dt>
<dd>DiMA JSON converted csv file data</dd>


<dt>host</dt>
<dd>number of host (1/2)</dd>


<dt>protein_order</dt>
<dd>order of proteins displayed in plot</dd>


<dt>base_size</dt>
<dd>base font size in plot</dd>


<dt>alpha</dt>
<dd>any number from 0 (transparent) to 1 (opaque)</dd>


<dt>line_dot_size</dt>
<dd>dot size in scatter plot</dd>


<dt>bw</dt>
<dd>smoothing bandwidth of violin plot (default: nrd0)</dd>


<dt>adjust</dt>
<dd>adjust the width of violin plot (default: 1)</dd>

</dl>

plot_dynamics_protein: Dynamics of Diversity Motifs (Protein) Plot

Description

Usage

Value

Arguments

Examples