plot_world_map

This function plots a world map and color the affected geographical region(s)
from light (lower) to dark (higher), depends on the cumulative number of sequences.
Aside from the plot, this function also returns a dataframe with 2 columns: 'Region' and 'Number of Sequences'.
The input dataframe of this function is obtainable from metadata_extraction(), with NCBI
Protein / GISAID (EpiFlu/EpiCoV/EpiPox/EpiArbo) FASTA file as input.

To ease the visualization of outputs from Diversity Motif Analyser ('DiMA';
<https://github.com/BVU-BILSAB/DiMA>). 'vDiveR' allows visualization of the diversity
motifs (index and its variants – major, minor and unique) for elucidation of
the underlying inherent dynamics. Please refer <https://vdiver-manual.readthedocs.io/en/latest/>
for more information.

Pendy Tok

vDiveR

Visualization of Viral Protein Sequence Diversity Dynamics

Li Chuin Chong

Evgenia Chikina

Yin Cheng Chen

Mohammad Asif Khan

plot_world_map function

<dl><dt>metadata</dt>
<dd>a dataframe with 3 columns, 'ID', 'region', and 'date'</dd>
<dt>base_size</dt>
<dd>word size in plot</dd></dl>

Arguments

Geographical Distribution of Sequences Plot — plot_world_map

<dl>

<dt>metadata</dt>
<dd>a dataframe with 3 columns, 'ID', 'region', and 'date'</dd>


<dt>base_size</dt>
<dd>word size in plot</dd>

</dl>

plot_world_map: Geographical Distribution of Sequences Plot

Description

Usage

Value

Arguments

Examples