check.cluster.method

The user defined clustering method for the
<code><a rd-options="=ConservedWaters" href="/link/ConservedWaters()?package=vanddraabe&version=1.1.1&to=%3DConservedWaters" data-mini-rdoc="=ConservedWaters::ConservedWaters()">ConservedWaters()</a></code> and <code><a rd-options="=ConservedWaters.MDS" href="/link/ConservedWaters.MDS()?package=vanddraabe&version=1.1.1&to=%3DConservedWaters.MDS" data-mini-rdoc="=ConservedWaters.MDS::ConservedWaters.MDS()">ConservedWaters.MDS()</a></code>.

cluster.method

Ensures the user provided clustering method is a valid choice.

Identify and analyze conserved waters within crystallographic
protein structures and molecular dynamics simulation trajectories. Statistical
parameters for each water cluster, informative graphs, and a PyMOL session
file to visually explore the conserved waters and protein are returned.
Hydrophilicity is the propensity of waters to congregate near specific protein
atoms and is related to conserved waters. An informatics derived set of
hydrophilicity values are provided based on a large, high-quality X-ray
protein structure dataset.

Emilio Xavier Esposito

vanddraabe

Identification and Statistical Analysis of Conserved Waters Near
Proteins

check.cluster.method function

The user defined clustering method for the
<code><a rd-options='=ConservedWaters' href='ConservedWaters()'>ConservedWaters()</a></code> and <code><a rd-options='=ConservedWaters.MDS' href='ConservedWaters.MDS()'>ConservedWaters.MDS()</a></code>.

check.cluster.method: Check Clustering Method

Description

Usage

Arguments

Value

Details