
Polar atom names based on PDB atom naming conventions.
names.polar.atoms
An object of class character
of length 20.
Polar atoms are those possessing a lone pair(s) of elections able to participate in hydrogen bonds with hydrogen atoms within 3.5 Angstroms and XX degrees of the lone pair containing atom. Traditionally, nitrogen, oxygen, and sulfur atoms possess lone pair(s) of electrons and participate in hydrogen bonds in biological sytems. Water molecules are able to hydrogen bond with and participate in hydrogen bonds.
Other constants: names.backbone.atoms
,
names.res.AtomTypes
,
names.resATs.carb.sulf
,
names.resATs.nitro.neut
,
names.resATs.nitro.pos
,
names.resATs.oxy.neg
,
names.resATs.oxy.neut
,
names.residues
,
names.sidechain.atoms
,
names.waters
# NOT RUN {
names.polar.atoms
# [1] "N" "NE" "NH1" "NH2" "ND2" "NE2" "ND1" "NZ" "NE1" "O" "OD1"
# "OD2" "OE1" "OE2" "OG" "OG1" "OH" "S" "SD" "SG"
# }
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