vanddraabe (version 1.1.1)

res2xyz: Residue Indices to Coordinate Indices

Description

Return the coordinate indices for the provided residue indices.

Usage

res2xyz(res.idc)

Arguments

res.idc

Indicies of residues to convert to coordinate indices

Value

Vector of coordinate indicies to be applied to pdb$xyz

Details

Using the residue indices of the atoms base::data.frame() (e.g., pdb$atom) determine the coodinate indices of the residue atoms (e.g., pdb$xyz).

See Also

Other utilities: ConservationSet, DetermineChainsOfInterest, ExtractFileTimeStamp, ExtractPDBids, FileTimeStamp, HasXWaters, Nearby, ProtHetWatIndices, RescaleValues, RetainChainsOfInterest, ReturnPDBfullPath, StandardizeAsparticAcidNames, StandardizeCysteineNames, StandardizeGlutamicAcidNames, StandardizeHistidineNames, StandardizeLysineNames, TimeSpan, UniqueAtomHashes, aaStandardizeNames, getAtomTypeCounts, getResTypeCounts, resAtomType2AtomClass, write.basic.pdb, write.conservedWaters.pdb

Examples

# NOT RUN {
  res.idc <- c(5:10)
  res2xyz(res.idc)
  # [1] 13 15 15 16 18 18 19 21 21 22 24 24 25 27 27 28 30

# }