fix.lofreq.af

<p>Data frame of variant file information</p>

variant.specification

<p>LoFreq also does not output allele frequencies, so this script calculates them from the
 DP (depth) and AD (variant allele depth) values--which are also not output nicely--
 and adds them to the annotated vcf.</p>

Multi-caller variant analysis pipeline for targeted analysis sequencing (TAS) data. Features a modular, automated workflow that can start with raw reads and produces a user-friendly PDF summary and a spreadsheet containing consensus variant information.

Adam Mills

varitas

fix.lofreq.af: fix.lofreq.af

Description

Usage

Arguments