varitas (version 0.0.2)

prepare.vcf.specification: prepare.vcf.specification

Description

Prepare VCF specification data frame for annotation

Usage

prepare.vcf.specification(vcf.details, sample.id.column = 1,
  vcf.column = 2, job.dependency.column = NA, caller.column = NA)

Arguments

vcf.details

Data frame containing details of VCF files

sample.id.column

Identifier of column in vcf.details containing sample IDs (index or name)

vcf.column

Identifier of column in vcf.details containing VCF file (index or name)

job.dependency.column

Identifier of column in vcf.details containing job dependency (index or name)

caller.column

Identifier of column in vcf.details containing caller (index or name)

Value

Properly formatted VCF details