process.total.coverage.statistics

<p>Path to project directory. Each sample should have its own subdirectory</p>

project.directory

<p>Process reports generated by flagstat. 
Assumes reports for before and after off-target filtering have been written to the same file, with separating headers</p>

Multi-caller variant analysis pipeline for targeted analysis sequencing (TAS) data. Features a modular, automated workflow that can start with raw reads and produces a user-friendly PDF summary and a spreadsheet containing consensus variant information.

Adam Mills

varitas

process.total.coverage.statistics: Process total coverage statistics

Description

Usage

Arguments

Value