varitas (version 0.0.2)

set.varitas.options: Set options for varitas pipeline.

Description

Set or overwrite options for the VariTAS pipeline. Nested options should be separated by a dot. For example, to update the reference genome for grch38, use reference_genome.grch38

Usage

set.varitas.options(...)

Arguments

…

options to set

Value

None

Examples

# NOT RUN {
set.varitas.options(reference_build = 'grch38'); 	
	set.varitas.options(
	filters.mutect.min_normal_depth = 10,
	filters.vardict.min_normal_depth = 10
	);
# }