verify.fastq.specification

Data frame containing columns sample.id and reads, and optionally a column mates

fastq.specification

Logical indicating whether paired end reads are used

paired.end

Logical indicating if the files already exist on disk. If there are job dependencies, this should be set to FALSE.

files.ready

Check that FASTQ specification data frame matches expected format, and that all files exist

Multi-caller variant analysis pipeline for targeted analysis sequencing (TAS) data. Features a modular, automated workflow that can start with raw reads and produces a user-friendly PDF summary and a spreadsheet containing consensus variant information.

verify.fastq.specification: Check that FASTQ specification data frame matches expected format, and that all files exist

Description

Usage

Arguments

Value