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vascr

The goal of vascr is to easily process impedance sensing data from ECIS, xCELLigence, cellZscope and ScioSpec platforms.

Installation

You can install the development version of vascr from GitHub with:

# install.packages("pak")
pak::pak("JamesHucklesby/vascr")

Example

Vascr can rapidly plot impedance sensing data.

library(vascr)
vascr_plot_line(growth.df %>% vascr_subset(unit = "R", frequency = "4000"))

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Version

Install

install.packages('vascr')

Version

0.1.4

License

GPL (>= 3)

Issues

0

Pull Requests

0

Stars

0

Forks

0

Maintainer

James JW Hucklesby

Last Published

February 6th, 2026

Functions in vascr (0.1.4)

vascr_save

Save a vascr dataset
vascr_edit_sample

Rename a sample in a vascr dataset
vascr_zero_time

Set a particular time point as 0 in a vascr dataset
vascr_plot_line_dunnett

Create a line plot with Dunnett's statistics
vascr_plot_resample

Plot the data re sampling process
vascr_shiny

Launch the vascr UI
vascr_exclude

Exclude samples from a vascr dataset
vascr_edit_name

Edit a sample name in a vascr dataframe
vascr_resample_time

Resample a vascr dataset
vascr_samples

List out the samples currently in a vascr data set
vascr_dunnett

Run ANOVA and Dunnett's comparisons on a vascr dataset
vascr_export_prism

Export a vascr dataframe
vascr_explode

Separate names in a vascr data frame
vascr_summarise

Summarise a vascr data set down to a particular level
vascr_subset

Subset a vascr data set based on a number of factors
vascr_plot_grid

Plot out each replicate well in a grid, with QC overlays
vascr_plot_line

Plot a line graph with vascr
vascr_import

Import an impedance datafile to vascr
vascr_load

Load a vascr dataset
vascr_add_vline

Add a vertical line to a vascr line plot
vascr-package

vascr: Process Biological Impedance Sensing Data
growth.df

Vascr growth data
ecis_import

Import all ECIS values, a child of ecis_import_raw and ecis_import_model
vascr_apply_map

Apply a map to a vascr dataset
vascr_combine

Combine ECIS data frames end to end
%>%

re-export magrittr pipe operator
growth_unresampled.df

Vascr growth data which is not resampled
rbgrowth.df

Vascr growth data which is not re sampled
small_growth.df

Small growth data set for testing
vascr_find

Find vascr variables
vascr_find_level

Check the level of a vascr data frame
vascr_find_metadata

Print out the characteristics of the vascr data frame
vascr_implode

Implode individual samples from a vascr dataset
vascr_normalise

Normalize ECIS data to a single time point
vascr_plot_anova

Make a display with all the ANOVA analysis pre-conducted