vcfplot

Make sensible and beautiful plots based on various objects in vcfppR

The 'vcfpp.h' (<https://github.com/Zilong-Li/vcfpp>) provides an easy-to-use 'C++' 'API' of 'htslib', offering full functionality for manipulating Variant Call Format (VCF) files. The 'vcfppR' package serves as the R bindings of the 'vcfpp.h' library, enabling rapid processing of both compressed and uncompressed VCF files. Explore a range of powerful features for efficient VCF data manipulation.

Zilong Li

vcfppR

Rapid Manipulation of the Variant Call Format (VCF)

vcfplot function

<dl><dt>obj</dt>
<dd>object returned by vcftable, vcfcomp, vcfsummary</dd>
<dt>which.sample</dt>
<dd>which sample to be plotted. NULL will aggregate all samples.</dd>
<dt>which.format</dt>
<dd>which FORMAT field to be plotted. Defaults will use the 10-th names.</dd>
<dt>variant</dt>
<dd>which types of variant are desired</dd>
<dt>pop</dt>
<dd>file contains population information</dd>
<dt>...</dt>
<dd>parameters passed to graphics</dd></dl>

Arguments

Make sensible and beautiful plots based on various objects in vcfppR — vcfplot

<dl>

<dt>obj</dt>
<dd>object returned by vcftable, vcfcomp, vcfsummary</dd>


<dt>which.sample</dt>
<dd>which sample to be plotted. NULL will aggregate all samples.</dd>


<dt>which.format</dt>
<dd>which FORMAT field to be plotted. Defaults will use the 10-th names.</dd>


<dt>variant</dt>
<dd>which types of variant are desired</dd>


<dt>pop</dt>
<dd>file contains population information</dd>


<dt>...</dt>
<dd>parameters passed to graphics</dd>

</dl>

vcfplot: Make sensible and beautiful plots based on various objects in vcfppR

Description

Usage

Arguments