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vegan (version 1.11-4)
Community Ecology Package
Description
Ordination methods, diversity analysis and other functions for community and vegetation ecologists.
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Install
install.packages('vegan')
Monthly Downloads
79,999
Version
1.11-4
License
GPL-2
Homepage
http://cran.r-project.org/
Maintainer
Jari Oksanen
Last Published
June 6th, 2025
Functions in vegan (1.11-4)
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betadisper
Multivariate homogeneity of groups dispersions (variances)
adonis
Multivariate Analysis of Variance Using Distance Matrices
distconnected
Connectedness of Dissimilarities
dune.taxon
Taxonomic Classification of Dune Meadow Species
anosim
Analysis of Similarities
decostand
Standardization Methods for Community Ecology
sipoo
Birds in the Archipelago of Sipoo (Sibbo)
CCorA
Canonical Correlation Analysis
mite
Oribatid Mite Data with Explanatory Variables
biplot.rda
PCA biplot
dune
Vegetation and Environment in Dutch Dune Meadows.
plot.cca
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis
cca
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis
renyi
Renyi and Hill Diversities and Corresponding Accumulation Curves
vegandocs
Display Package Documentation
cca.object
Result Object from Constrained Ordination with cca, rda or capscale
screeplot.cca
Screeplots for Ordination Results and Broken Stick Distributions
mantel
Mantel and Partial Mantel Tests for Dissimilarity Matrices
linestack
Plots One-dimensional Diagrams without Overwriting Labels
deviance.cca
Statistics Resembling Deviance and AIC for Constrained Ordination
envfit
Fits an Environmental Vector or Factor onto an Ordination
scores
Get Species or Site Scores from an Ordination
vegemite
Prints a Compact, Ordered Vegetation Table
capscale
[Partial] Constrained Analysis of Principal Coordinates or distance-based RDA
radfit
Rank -- Abundance or Dominance / Diversity Models
beals
Beals Smoothing and Degree of Absence
predict.cca
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
specpool
Extrapolated Species Richness in a Species Pool
orditorp
Add Text or Points to Ordination Plots
diversity
Ecological Diversity Indices and Rarefaction Species Richness
permuted.index2
Unrestricted and restricted permutations
as.mlm.cca
Refit Constrained Ordination as a Multiple Response Linear Model
bgdispersal
Coefficients of Biogeographical Dispersal Direction
isomap
Isometric Feature Mapping Ordination
goodness.cca
Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
ordisurf
Fit and Plot Smooth Surfaces of Variables on Ordination.
read.cep
Reads a CEP (Canoco) data file
ordiresids
Plots of Residuals and Fitted Values for Constrained Ordination
ordiplot
Alternative plot and identify Functions for Ordination
prc
Principal Response Curves for Treatments with Repeated Observations
vegdist
Dissimilarity Indices for Community Ecologists
ordixyplot
Trellis (Lattice) Plots for Ordination
permCheck
Utility functions for permutation schemes
decorana
Detrended Correspondence Analysis and Basic Reciprocal Averaging
BCI
Barro Colorado Island Tree Counts
ordihull
Add Graphical Items to Ordination Diagrams
fisherfit
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data
ordiplot3d
Three-Dimensional and Dynamic Ordination Graphics
procrustes
Procrustes Rotation of Two Configurations and PROTEST
rankindex
Compares Dissimilarity Indices for Gradient Detection
cascadeKM
K-means partitioning using a range of values of K
metaMDS
Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores
mrpp
Multi Response Permutation Procedure of Within- versus Among-Group Dissimilarities
spantree
Minimum Spanning Tree
orditkplot
Ordination Plot with Movable Labels
humpfit
No-interaction Model for Hump-backed Species Richness vs. Biomass
vegan-internal
Internal vegan functions
stepacross
Stepacross as Flexible Shortest Paths or Extended Dissimilarities
varpart
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices
specaccum
Species Accumulation Curves
varespec
Vegetation and environment in lichen pastures
bioenv
Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities
make.cepnames
Abbreviates a Botanical or Zoological Latin Name into an Eight-character Name
taxondive
Indices of Taxonomic Diversity and Distinctness
wascores
Weighted Averages Scores for Species
anova.cca
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates
designdist
Design your own Dissimilarities
goodness.metaMDS
Goodness of Fit and Shepard Plot for Nonmetric Multidimensional Scaling
pyrifos
Response of Aquatic Invertebrates to Insecticide Treatment
oecosimu
Nestedness and Null Models for Islands or Patches