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vegan (version 1.6-0)
Community Ecology Package
Description
Ordination methods and other useful functions for community and vegetation ecologists.
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Install
install.packages('vegan')
Monthly Downloads
88,429
Version
1.6-0
License
GPL2
Maintainer
Jari Oksanen
Last Published
October 19th, 2003
Functions in vegan (1.6-0)
Search functions
capscale
[Partial] Constrained Analysis of Principal Coordinates
envfit
Fits an Environmental Vector or Factor onto an Ordination
scores
Get Species or Site Scores from an Ordination
decostand
Standardizaton Methods for Community Ecology
read.cep
Reads a CEP (Canoco) data file
anova.cca
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates
vegan-internal
Internal vegan functions
specaccum
Species Accumulation Curves
diversity
Ecological Diversity Indices and Rarefaction Species Richness
rankindex
Compares Dissimilarity Indices for Gradient Detection
ordihull
Add Graphical Items to Ordination Diagrams
ordiplot
Alternative plot and identify Functions for Ordination
wascores
Weighted Averages Scores for Species
ordisurf
Smooths Variables and Plots Contours on Ordination.
cca
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis
radfit
Rank -- Abundance or Dominance / Diversity Models
varespec
Vegetation and environment in lichen pastures
anosim
Analysis of Similarities
BCI
Barro Colorado Island Tree Counts
plot.cca
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis
make.cepnames
Abbreviates a Botanical or Zoological Latin Name into an Eight-character Name
mantel
Mantel Test for Two Dissimilarity Matrices
dune
Vegetation and Environment in Dutch Dune Meadows.
vegemite
Prints a Compact, Ordered Vegetation Table
vegdist
Dissimilarity Indices for Community Ecologists
initMDS
Random Start and Axis Scaling for isoMDS
procrustes
Procrustes Rotation of Two Configurations
decorana
Detrended Correspondence Analysis and Basic Reciprocal Averaging
fisherfit
Fit Fisher's Logseries and Preston's Lognormal model to Abundance Data
distconnected
Connectedness and Minimum Spanning Tree for Dissimilarities
stepacross
Stepacross as Flexible Shortest Paths or Extended Dissimilarities
specpool
Extrapolated Species Richness in a Species Pool