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vegan (version 1.8-8)
Community Ecology Package
Description
Ordination methods, diversity analysis and other functions for community and vegetation ecologists.
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Install
install.packages('vegan')
Monthly Downloads
94,965
Version
1.8-8
License
GPL v2 (but not later)
Homepage
http://cran.r-project.org/
Maintainer
Jari Oksanen
Last Published
June 6th, 2025
Functions in vegan (1.8-8)
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metaMDS
Nonmetric Multidimensional Scaling with Stable Solution from Random Starts, Axis Scaling and Species Scores
spantree
Minimum Spanning Tree
orditorp
Add Text or Points to Ordination Plots
scores
Get Species or Site Scores from an Ordination
ordisurf
Fit and Plot Smooth Surfaces of Variables on Ordination.
adonis
Multivariate Analysis of Variance Using Distance Matrices
decorana
Detrended Correspondence Analysis and Basic Reciprocal Averaging
cascadeKM
K-means partitioning using a range of values of K
dune
Vegetation and Environment in Dutch Dune Meadows.
varespec
Vegetation and environment in lichen pastures
as.mlm.cca
Refit Constrained Ordination as a Multiple Response Linear Model
anova.cca
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates
anosim
Analysis of Similarities
specpool
Extrapolated Species Richness in a Species Pool
BCI
Barro Colorado Island Tree Counts
deviance.cca
Statistics Resembling Deviance and AIC for Constrained Ordination
mite
Oribatid Mite Data with Explanatory Variables
cca
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis
fisherfit
Fit Fisher's Logseries and Preston's Lognormal Model to Abundance Data
make.cepnames
Abbreviates a Botanical or Zoological Latin Name into an Eight-character Name
mantel
Mantel and Partial Mantel Tests for Dissimilarity Matrices
capscale
[Partial] Constrained Analysis of Principal Coordinates or distance-based RDA
taxondive
Indices of Taxonomic Diversity and Distinctness
procrustes
Procrustes Rotation of Two Configurations and PROTEST
goodness.cca
Diagnostic Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
dune.taxon
Taxonomic Classification of Dune Meadow Species
stepacross
Stepacross as Flexible Shortest Paths or Extended Dissimilarities
rankindex
Compares Dissimilarity Indices for Gradient Detection
beals
Beals Smoothing and Degree of Absence
isomap
Isometric Feature Mapping Ordination
linestack
Plots One-dimensional Diagrams without Overwriting Labels
pyrifos
Response of Aquatic Invertebrates to Insecticide Treatment
prc
Principal Response Curves for Treatments with Repeated Observations
ordiplot3d
Three-Dimensional and Dynamic Ordination Graphics
envfit
Fits an Environmental Vector or Factor onto an Ordination
predict.cca
Prediction Tools for [Constrained] Ordination (CCA, RDA, DCA, CA, PCA)
renyi
Renyi and Hill Diversities and Corresponding Accumulation Curves
vegandocs
Display Package Documentation
decostand
Standardizaton Methods for Community Ecology
wascores
Weighted Averages Scores for Species
cca.object
Result Object from Constrained Ordination with cca, rda or capscale
radfit
Rank -- Abundance or Dominance / Diversity Models
plot.cca
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis
varpart
Partition the Variation of Community Matrix by 2, 3, or 4 Explanatory Matrices
read.cep
Reads a CEP (Canoco) data file
humpfit
No-interaction Model for Hump-backed Species Richness vs. Biomass
mrpp
Multi Response Permutation Procedure of Within- versus Among-Group Dissimilarities
bgdispersal
Coefficients of Biogeographical Dispersal Direction
specaccum
Species Accumulation Curves
vegan-internal
Internal vegan functions
vegdist
Dissimilarity Indices for Community Ecologists
distconnected
Connectedness of Dissimilarities
goodness.metaMDS
Goodness of Fit and Shepard Plot for Nonmetric Multidimensional Scaling
screeplot.cca
Screeplots for Ordination Results and Broken Stick Distributions
ordihull
Add Graphical Items to Ordination Diagrams
bioenv
Best Subset of Environmental Variables with Maximum (Rank) Correlation with Community Dissimilarities
vegemite
Prints a Compact, Ordered Vegetation Table
designdist
Design your own Dissimilarities
diversity
Ecological Diversity Indices and Rarefaction Species Richness
ordiplot
Alternative plot and identify Functions for Ordination