velocyto.R (version 0.6)

read.loom.matrices: Read in loom matrices of spliced/unpsliced reads as prepared by velocyto.py CLI

Description

Read in loom matrices of spliced/unpsliced reads as prepared by velocyto.py CLI

Usage

read.loom.matrices(file, engine = "hdf5r")

Arguments

file

loom file name

engine

Use hdf5r or h5 to import loom file

Value

a list containing spliced, unspliced, ambiguous and spanning matrices