Read in cell-specific bam files for STRT/C1
read.strtc1.bams(bam.files, annotation.file, min.exon.count = 100,
n.cores = defaultNCores(), min.umi.reads = 1)list of bam files (one per cell)
gene annotation refFlat file
minimum number of molecules (across all cells) for the exon to be considered expressed
number of cores to use
minimum number of read required per UMI/gene combination to be counted (defaults to 1)
a list structure analogous to the return of read.smartseq2.bams(), counting molecules instead of reads.