plot_cm_mb

Scatter plot relating linkage map and genomic positions

internal

Provides a graphical user interface to integrate, visualize and explore results
from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid
species. The app is meant for interactive use and allows users to optionally upload different sources
of information, including  gene annotation and alignment files, enabling the exploitation and search for
candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly',
'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.

Cristiane Taniguti

viewpoly

A Shiny App to Visualize Genetic Maps and QTL Analysis in
Polyploid Species

Gabriel de Siqueira Gesteira

Jeekin Lau

Olivia Angelin-Bonnet

Susan Thomson

Guilherme da Silva Pereira

David Byrne

Zhao-Bang Zeng

Oscar Riera-Lizarazu

Marcelo Mollinari

plot_cm_mb function

<dl><dt>viewmap</dt>
<dd>object of class <code>viewmap</code></dd>
<dt>group</dt>
<dd>selected group ID</dd>
<dt>range.min</dt>
<dd>minimum value of the selected position range</dd>
<dt>range.max</dt>
<dd>maximum value of the selected position range</dd></dl>

Arguments

Scatter plot relating linkage map and genomic positions — plot_cm_mb

<dl>

<dt>viewmap</dt>
<dd>object of class <code>viewmap</code></dd>


<dt>group</dt>
<dd>selected group ID</dd>


<dt>range.min</dt>
<dd>minimum value of the selected position range</dd>


<dt>range.max</dt>
<dd>maximum value of the selected position range</dd>

</dl>

Scatter plot relating linkage map and genomic positions

plot_cm_mb: Scatter plot relating linkage map and genomic positions

Description

Usage

Arguments