plot_map_list

This function plots a genetic linkage map(s)

internal

Provides a graphical user interface to integrate, visualize and explore results
from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid
species. The app is meant for interactive use and allows users to optionally upload different sources
of information, including  gene annotation and alignment files, enabling the exploitation and search for
candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly',
'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.

Cristiane Taniguti

viewpoly

A Shiny App to Visualize Genetic Maps and QTL Analysis in
Polyploid Species

Gabriel de Siqueira Gesteira

Jeekin Lau

Olivia Angelin-Bonnet

Susan Thomson

Guilherme da Silva Pereira

David Byrne

Zhao-Bang Zeng

Oscar Riera-Lizarazu

Marcelo Mollinari

plot_map_list function

<dl><dt>viewmap</dt>
<dd>object of class <code>viewmap</code></dd>
<dt>horiz</dt>
<dd>logical. If FALSE, the maps are plotted vertically with the first map to the left. 
If TRUE (default), the maps are plotted horizontally with the first at the bottom</dd>
<dt>col</dt>
<dd>a vector of colors for the bars or bar components (default = 'lightgrey')
<code>ggstyle</code> produces maps using the default <code>ggplot</code> color palette</dd>
<dt>title</dt>
<dd>a title (string) for the maps (default = 'Linkage group')</dd></dl>

Arguments

Marcelo Mollinari, <a href="/link/mmollin%40ncsu.edu?package=viewpoly&version=0.4.1" data-mini-rdoc="viewpoly::mmollin@ncsu.edu">mmollin@ncsu.edu</a>
Cristiane Taniguti, <a href="/link/chtaniguti%40tamu.edu?package=viewpoly&version=0.4.1" data-mini-rdoc="viewpoly::chtaniguti@tamu.edu">chtaniguti@tamu.edu</a>

Author

Plot a genetic map - Adapted from MAPpoly — plot_map_list

<dl>

<dt>viewmap</dt>
<dd>object of class <code>viewmap</code></dd>


<dt>horiz</dt>
<dd>logical. If FALSE, the maps are plotted vertically with the first map to the left. 
If TRUE (default), the maps are plotted horizontally with the first at the bottom</dd>


<dt>col</dt>
<dd>a vector of colors for the bars or bar components (default = 'lightgrey')
<code>ggstyle</code> produces maps using the default <code>ggplot</code> color palette</dd>


<dt>title</dt>
<dd>a title (string) for the maps (default = 'Linkage group')</dd>

</dl>

Marcelo Mollinari, <a href='mailto:mmollin@ncsu.edu'>mmollin@ncsu.edu</a>
Cristiane Taniguti, <a href='mailto:chtaniguti@tamu.edu'>chtaniguti@tamu.edu</a>

plot_map_list: Plot a genetic map - Adapted from MAPpoly

Description

Usage

Value

Arguments

Author

References