plot_one_map

Plot a single linkage group with no phase - from MAPpoly

internal

Provides a graphical user interface to integrate, visualize and explore results
from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid
species. The app is meant for interactive use and allows users to optionally upload different sources
of information, including  gene annotation and alignment files, enabling the exploitation and search for
candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly',
'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.

Cristiane Taniguti

viewpoly

A Shiny App to Visualize Genetic Maps and QTL Analysis in
Polyploid Species

Gabriel de Siqueira Gesteira

Jeekin Lau

Olivia Angelin-Bonnet

Susan Thomson

Guilherme da Silva Pereira

David Byrne

Zhao-Bang Zeng

Oscar Riera-Lizarazu

Marcelo Mollinari

plot_one_map function

<dl><dt>x</dt>
<dd>vector of genetic distances</dd>
<dt>i</dt>
<dd>margins size</dd>
<dt>horiz</dt>
<dd>logical TRUE/FALSE. If TRUE the map is plotted horizontally.</dd>
<dt>col</dt>
<dd>color pallete to be used</dd></dl>

Arguments

Plot a single linkage group with no phase - from MAPpoly — plot_one_map

<dl>

<dt>x</dt>
<dd>vector of genetic distances</dd>


<dt>i</dt>
<dd>margins size</dd>


<dt>horiz</dt>
<dd>logical TRUE/FALSE. If TRUE the map is plotted horizontally.</dd>


<dt>col</dt>
<dd>color pallete to be used</dd>

</dl>

Plot a single linkage group with no phase - from MAPpoly

plot_one_map: Plot a single linkage group with no phase - from MAPpoly

Description

Usage

Arguments