virtualPollen (version 1.0.1)

plotSimulation: Plots results of simulatePopulation.

Description

This function takes as input the output of simulatePopulation, and plots the pollen abundance, number of individuals, biomass, driver, and environmnetal suitability of each simulation outcome.

Usage

plotSimulation(
  simulation.output = NULL,
  species = "all",
  burnin = FALSE,
  filename = NULL,
  time.zoom = NULL,
  panels = c("Driver A",
           "Driver B",
           "Suitability",
           "Population",
           "Mortality",
           "Biomass",
           "Pollen"
           ),
 plot.title = NULL,
 width = 12,
 text.size = 20,
 title.size = 25,
 line.size = 1
 )

Arguments

simulation.output

output of simulatePopulation.

species

a number or vector of numbers representing rows in the parameters dataframe, or a string or vector of strings referencing to the "label" column of the parameters dataframe.

burnin

if FALSE, burn-in period is not considered in the model.

filename

character string, name of output pdf file. If NULL or empty, no pdf is produced. It shouldn't include the extension of the output file.

time.zoom

vector of two numbers indicating the beginnign and end of the time interval to be plotted (i.e. "c(5000, 10000)")

panels

character string or vector of character strings with these possible values: "Driver A", "Driver B","Suitability", "Population", "Mortality", "Biomass", "Pollen".

plot.title

character string to use as plot title.

width

plot width in inches.

text.size

text size of the plot.

title.size

plot title size.

line.size

size of lines in plots.

Details

The user can decide what virtual taxa to plot (argument species), and what information to show throught the panels argument. Output is plotted on screen by default, and printed to pdf if the filename argument is filled.

See Also

simulatePopulation, compareSimulations

Examples

# NOT RUN {
#getting example data
data(simulation)

#plot first simulation
plotSimulation(simulation.output = simulation[[1]])

# }