position_allele_freq

Reads in a dataframe that has been arranged (arrange_data) and filtered (filter_variants) and outputs plots

Analysis of minor alleles in Illumina sequencing data of viral
genomes. Functions in 'vivaldi' primarily operate on vcf files.

David Gresham

vivaldi

Viral Variant Location and Diversity

Marissa Knoll

Katherine Johnson

Megan Hockman

Eric Borenstein

Mohammed Khalfan

Elodie Ghedin

position_allele_freq function

<dl><dt>vardf</dt>
<dd>A rearranged (arrange_data) and filtered (filtered_variants) vcf dataframe</dd>
<dt>segment</dt>
<dd>Name of segment (must be in quotes)</dd>
<dt>nt</dt>
<dd>Position on segment (must be in quotes)</dd></dl>

Arguments

position_allele_freq — position_allele_freq

<dl>

<dt>vardf</dt>
<dd>A rearranged (arrange_data) and filtered (filtered_variants) vcf dataframe</dd>


<dt>segment</dt>
<dd>Name of segment (must be in quotes)</dd>


<dt>nt</dt>
<dd>Position on segment (must be in quotes)</dd>

</dl>

position_allele_freq: position_allele_freq

Description

Usage

Value

Arguments

Examples