quantify_mean_width

A CSV file created by select_roi or threshold_vessel

widths_file

The number of pixels per mm, can be calculated with
calibrate_pixel_size if unknown

pixel_scale

This function calculates the overall widths and contraction parameters for the vessel as a whole.

A variety of tools to allow the quantification of videos of the
lymphatic vasculature taken under an operating microscope. Lymphatic vessels
that have been injected with a variety of blue dyes can be tracked throughout
the video to determine their width over time. Code is optimised
for efficient processing of multiple large video files. Functions to calculate
physiologically relevant parameters and generate graphs from these values
are also included.

James JW Hucklesby

quantify_mean_width: Quantify the vessel width over an entire ROI

Description

Usage

Arguments

Value

Examples