threshold_vessel

path to the file to be used. If left blank, the user will be
prompted to make a selection

file_path

threshold

Minimum area to recognize as a vessel. Any smaller items will
be ignored

min_area

Apply a threshold to a single frame

A variety of tools to allow the quantification of videos of the
lymphatic vasculature taken under an operating microscope. Lymphatic vessels
that have been injected with a variety of blue dyes can be tracked throughout
the video to determine their width over time. Code is optimised
for efficient processing of multiple large video files. Functions to calculate
physiologically relevant parameters and generate graphs from these values
are also included.

James JW Hucklesby

threshold_vessel: Apply a threshold to a single frame

Description

Usage

Arguments

Value