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voluModel (version 0.2.2)

Modeling Species Distributions in Three Dimensions

Description

Facilitates modeling species' ecological niches and geographic distributions based on occurrences and environments that have a vertical as well as horizontal component, and projecting models into three-dimensional geographic space. Working in three dimensions is useful in an aquatic context when the organisms one wishes to model can be found across a wide range of depths in the water column. The package also contains functions to automatically generate marine training model training regions using machine learning, and interpolate and smooth patchily sampled environmental rasters using thin plate splines. Davis Rabosky AR, Cox CL, Rabosky DL, Title PO, Holmes IA, Feldman A, McGuire JA (2016) . Nychka D, Furrer R, Paige J, Sain S (2021) . Pateiro-Lopez B, Rodriguez-Casal A (2022) .

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Version

Install

install.packages('voluModel')

Monthly Downloads

150

Version

0.2.2

License

GPL-3

Maintainer

Hannah Owens

Last Published

August 20th, 2024

Functions in voluModel (0.2.2)

oneRasterPlot

Single raster plot
xyzSample

Sampling from a SpatRaster vector using 3D coordinates
smoothRaster

Smooth rasters
verticalSample

Vertical sample
transpColor

Transparent Color
bottomRaster

Bottom raster generation
columnParse

Column Parsing
MESS3D

Calculate MESS
plotLayers

Plotting 3D model in 2D
pointMap

Point mapping
marineBackground

Marine background shapefile generation
transectPlot

Plot vertical sample
areColors

Are Colors
mSampling3D

3D background sampling
interpolateRaster

Interpolate patchily sampled rasters
diversityStack

Diversity stack
downsample

Occurrence downsampling
mSampling2D

2D background sampling
testIntersection

Test Intersection
pointCompMap

Comparative point mapping
centerPointRasterTemplate

Center Point Raster Template
rasterComp

Comparative raster mapping
blendColor

Blend Colors