vqtl (version 2.0.5)

scanonevar.boot: scanonevar.boot

Description

scanonevar.boot conducts a nonparametric bootstrap of one chromosome to establish a confidence interval on any peaks

Usage

scanonevar.boot(sov, n.resamples, chr, qtl_type = c("mQTL", "vQTL",
  "mvQTL"), random.seed = 27599, n.cores = parallel::detectCores() - 2,
  silent = FALSE)

Arguments

sov

the scanonevar whose significance should be assessed empirically in an FWER-controlling method

n.resamples

the number of resamples

chr

which chromosome to focus on

qtl_type

which type of QTL did you detect and want a CI for? mQTL, vQTL, or mvQTL.

random.seed

value to start the random number generator at, for reproducibility

n.cores

number of cores to use for the permutations

silent

Should all messaging be suppressed?

Value

27599

Examples

# NOT RUN {
set.seed(27599)
test.cross <- qtl::sim.cross(map = qtl::sim.map(len = rep(20, 5), n.mar = 5), n.ind = 50)
sov <- scanonevar(cross = test.cross)

# }