Microarray_Expression1

<p>Microarray_Expression1 data.frame containing expression data for 1000 genes and 18 individuals.</p>

datasets

Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks.  More about the methodology can be found at <doi:10.1186/s12859-018-2351-7>.

Deisy Gysi

Computing Weighted Topological Overlaps (wTO) & Consensus wTO
Network

Microarray_Expression1 function

<p>data.frame 1000 lines, 18 columns.</p>

Microarray_Expression1: Microarray_Expression1

Description

Usage

Arguments

Format