sample_ind

Computes the resufling of the expression values for the IDs.

internal

Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks. More about the methodology can be found at <doi:10.1186/s12859-018-2351-7>.

Deisy Gysi

Computing Weighted Topological Overlaps (wTO) & Consensus wTO
Network

sample_ind function

<dl><dt>x</dt>
<dd>Column to be resampled</dd>
<dt>dfExpression</dt>
<dd>data.frame object containing the genes expression on the rows and the individuals (Individuals in the Columns)</dd></dl>

Arguments

Deisy Morselli Gysi &lt;deisy at bioinf.uni-leipzig.de&gt;

Author

sample_ind — sample_ind

<dl>

<dt>x</dt>
<dd>Column to be resampled</dd>


<dt>dfExpression</dt>
<dd>data.frame object containing the genes expression on the rows and the individuals (Individuals in the Columns)</dd>

</dl>

sample_ind: sample_ind

Description

Usage

Arguments

Author