wTO.in.line

Transforms a correlation matrix into the line format.
Transforms a correlation matrix into the line format.

Computes the Weighted Topological Overlap with positive and negative signs (wTO) networks given a data frame containing the mRNA count/ expression/ abundance per sample, and a vector containing the interested nodes of interaction (a subset of the elements of the full data frame). It also computes the cut-off threshold or p-value based on the individuals bootstrap or the values reshuffle per individual. It also allows the construction of a consensus network, based on multiple wTO networks. The package includes a visualization tool for the networks. More about the methodology can be found at <doi:10.1186/s12859-018-2351-7>.

Deisy Gysi

Computing Weighted Topological Overlaps (wTO) & Consensus wTO
Network

wTO.in.line function

<dl><dt>d</dt>
<dd>correlation matrix to be converted into the line format.</dd></dl>

Arguments

Deisy Morselli Gysi &lt;deisy at bioinf.uni-leipzig.de&gt;

Author

wTO.in.line — wTO.in.line

<dl>

<dt>d</dt>
<dd>correlation matrix to be converted into the line format.</dd>

</dl>

wTO.in.line: wTO.in.line

Description

Usage

Value

Arguments

Author