waveTiling (version 1.14.0)

getNonAnnotatedRegions: Get non-annotated regions

Description

Extract the significant regions found in the wavelet-based transcriptome analysis that don't show any overlap with the existing annotation.

Usage

getNonAnnotatedRegions(fit,inf,biomartObj)

Arguments

fit

object of class WfmFit

inf

object of class WfmInf

biomartObj

object of class TxDb representing an annotation database generated from BioMart.

Value

Examples

  library(waveTilingData)
  library(TxDb.Athaliana.BioMart.plantsmart22)
  data(leafdevFit)
  data(leafdevInfCompare)
  nonAnnoCompare <- getNonAnnotatedRegions(fit=leafdevFit,inf=leafdevInfCompare,	biomartObj=TxDb.Athaliana.BioMart.plantsmart22)
  nonAnnoCompare