plotTrait

Plots the trait space occupied by up to 3 traits with focals highlighted in red.

Analysing convergent evolution using the Wheatsheaf index, described in Arbuckle et al. (2014) <doi: 10.1111/2041-210X.12195>, and some other unrelated but perhaps useful functions.

Kevin Arbuckle

windex

Analysing Convergent Evolution using the Wheatsheaf Index

Amanda Minter

plotTrait function

<dl> <dt>dat</dt>
<dd>A dataframe containing a column of 0s and 1s to denote non-focal and focal taxa respectively, and columns of trait data which you which to plot.</dd> <dt>traits</dt>
<dd>Column numbers (or names) for 1-3 traits which you want to plot.</dd> <dt>focal</dt>
<dd>Column in the dataframe containing the focal designations.</dd> <dt>...</dt>
<dd>Arguments to be passed to plot (or scatterplot3d for 3 traits) to customise output.</dd></dl>

Arguments

Author

Provides a visualisation of up to three-dimensional trait space (not accounting for phylogeny) for data exploration — plotTrait

<dl>

 <dt>dat</dt>
<dd>A dataframe containing a column of 0s and 1s to denote non-focal and focal taxa respectively, and columns of trait data which you which to plot.</dd>

 <dt>traits</dt>
<dd>Column numbers (or names) for 1-3 traits which you want to plot.</dd>

 <dt>focal</dt>
<dd>Column in the dataframe containing the focal designations.</dd>

 <dt>...</dt>
<dd>Arguments to be passed to plot (or scatterplot3d for 3 traits) to customise output.</dd>

</dl>

plotTrait: Provides a visualisation of up to three-dimensional trait space (not accounting for phylogeny) for data exploration

Description

Usage

Arguments

Author

Examples